Browsing College of Sciences and Mathematics by Issue Date
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Bounded Complete Embedding Graphs, Extended Version
(2015-07-08)
This is the extended version of my dissertation, "Bounded Complete Embedding Graphs." This version is presented in three parts, each in a separate file.
[Part 1] Bounded Complete Embedding Graphs
[Part 2] Extension ...
Simulation studies of a recorder in three dimensions
(2015-10-12)
The aeroacoustics of a recorder are explored using a direct numerical simulation based on the Navier–Stokes equations in three dimensions. The qualitative behavior is studied using spatial maps of the air pressure and ...
Explaining the Railsback stretch in terms of the inharmonicity of piano tones and sensory dissonance
(2015-10-26)
The perceptual results of Plomp and Levelt for the sensory dissonance of a pair of
pure tones are used to estimate the dissonance of pairs of piano tones. By using the spectra of tones measured for a real piano, the effect ...
Geographic structure in the Southern Ocean circumpolar brittle star Ophionotus victoriae (Ophiuridae) revealed from mtDNA and single-nucleotide polymorphism data
(2019-04-29)
Marine systems have traditionally been thought of as "open" with few barriers to gene flow. In particular, many marine organisms in the Southern Ocean purportedly possess circumpolar distributions that have rarely been ...
Siboglinid-bacteria endosymbiosis: A model system for studying symbiotic mechanisms
(2019-04-29)
Siboglinid worms are a group of gutless marine annelids which are nutritionally dependent upon endosymbiotic bacteria.1,2 Four major groups of siboglinids are known including vestimentiferans, Osedax spp., frenulates and ...
The Adaptive Bleaching Hypothesis: Experimental Tests of Critical Assumptions
(2019-08-02)
Coral bleaching, the loss of color due to loss of symbiotic zooxanthellae or their pigment, appears to be increasing in intensity and geographic extent, perhaps related to increasing sea surface temperatures. The adaptive ...
Classification of a Hypervirulent Aeromonas hydrophila Pathotype Responsible for Epidemic Outbreaks in Warm-Water Fishes
(2019-04-29)
Lineages of hypervirulent Aeromonas hydrophila (vAh) are the cause of persistent outbreaks of motile Aeromonas septicemia in warm-water fishes worldwide. Over the last decade, this virulent lineage of A. hydrophila has ...
Phylogenetic and morphologic analyses of a coastal fish reveals a marine biogeographic break of terrestrial origin in the southern Caribbean
(2019-07-01)
BACKGROUND: Marine allopatric speciation involves interplay between intrinsic organismal properties and extrinsic factors. However, the relative contribution of each depends on the taxon under study and its geographic ...
Reproduction and development in Halocaridina rubra Holthuis, 1963 (Crustacea: Atyidae) clarifies larval ecology in the Hawaiian anchialine ecosystem
(2019-08-01)
Larvae in aquatic habitats often develop in environments different from those they inhabit as adults. Shrimp in the Atyidae exemplify this trend, as larvae of many species require salt or brackish water for development, ...
Tracking transmission of apicomplexan symbionts in diverse Caribbean corals
(2019-05-10)
Symbionts in each generation are transmitted to new host individuals either vertically (parent to offspring), horizontally (from exogenous sources), or a combination of both. Scleractinian corals make an excellent study ...
Genetic differentiation, structure, and a transition zone among populations of the pitcher plant moth Exyra semicrocea: implications for conservation
(2019-05-10)
Pitcher plant bogs, or carnivorous plant wetlands, have experienced extensive habitat loss and fragmentation throughout the southeastern United States Coastal Plain, resulting in an estimated reduction to <3% of their ...
Molecular genetic evidence that dinoflagellates belonging to the genus Symbiodinium freudenthal are haploid
(2019-08-02)
Microscopic and cytological evidence suggest that many dinoflagellates possess a haploid nuclear phase. However, the ploidy of a number of dinoflagellates remains unknown, and molecular genetic support for haploidy in this ...
Osmoregulation in the Hawaiian anchialine shrimp Halocaridina rubra (Crustacea: Atyidae): expression of ion transporters, mitochondria-rich cell proliferation and hemolymph osmolality during salinity transfers
(2019-08-08)
Studies of euryhaline crustaceans have identified conserved osmoregulatory adaptions allowing hyper-osmoregulation in dilute waters. However, previous studies have mainly examined decapod brachyurans with marine ancestries ...
Multiple colonizations lead to cryptic biodiversity in an island ecosystem: comparative phylogeography of anchialine shrimp species in the Ryukyu Archipelago, Japan
(2019-08-02)
Archipelagos of the Indo-West Pacific are considered to be among the richest in the world in biodiversity, and phylogeographic studies generally support either the center of origin or the center of accumulation hypothesis ...
Genetic population structure of an anchialine shrimp, Metabetaeus lohena (Crustacea: Alpheidae), in the Hawaiian Islands
(2019-07-15)
Anchialine habitats in the Hawaiian Islands, characterized as coastal bodies of land-locked salt or brackish water that fluctuate with the tides due to subterranean connections, are the only ecosystems of this type found ...
Reef endemism, host specificity and temporal stability in populations of symbiotic dinoflagellates from two ecologically dominant Caribbean corals
(2019-07-01)
BACKGROUND: The dinoflagellate genus Symbiodinium forms symbioses with numerous protistan and invertebrate metazoan hosts. However, few data on symbiont genetic structure are available, hindering predictions of how these ...
Nemertean toxin genes revealed through transcriptome sequencing
(2019-04-29)
Nemerteans are one of few animal groups that have evolved the ability to utilize toxins for both defense and subduing prey, but little is known about specific nemertean toxins. In particular, no study has identified specific ...
Biogeochemical and Microbial Variation across 5500 km of Antarctic Surface Sediment Implicates Organic Matter as a Driver of Benthic Community Structure
(2019-04-29)
Western Antarctica, one of the fastest warming locations on Earth, is a unique environment that is underexplored with regards to biodiversity. Although pelagic microbial communities in the Southern Ocean and coastal Antarctic ...
Performance of single and concatenated sets of mitochondrial genes at inferring metazoan relationships relative to full mitogenome data
(2019-05-10)
Mitochondrial (mt) genes are some of the most popular and widely-utilized genetic loci in phylogenetic studies of metazoan taxa. However, their linked nature has raised questions on whether using the entire mitogenome for ...